Identification of Peroxisome-Derived Hydrogen Peroxide-Sensitive Target Proteins Using a YAP1C-Based Genetic Probe. Celien Lismont, Iulia Revenco, Cláudio F Costa, Hongli Li, Mohamed A F Hussein, Paul P Van Veldhoven, Rita Derua, Marc Fransen Methods in Molecular Biology
Assessment of the Peroxisomal Redox State in Living Cells Using NADPH- and NAD+/NADH-Specific Fluorescent Protein Sensors. Cláudio F Costa, Hongli Li, Mohamed A F Hussein, Yi Yang, Celien Lismont, Marc Fransen Methods in Molecular Biology
Enhanced Levels of Peroxisome-Derived H2O2 Do Not Induce Pexophagy but Impair Autophagic Flux in HEK-293 and HeLa Cells. Hongli Li, Celien Lismont, Cláudio F Costa, Mohamed A F Hussein, Myriam Baes, Marc Fransen Antioxidants 12 (613)
The origin of long-chain fatty acids required for de novo ether lipid/plasmalogen synthesis. Chornyi S, Ofman R, Koster J, Waterham HR J Lipid Res 100364
Generation of Reporter Cell Lines for Endogenous Expression Analysis of Peroxisomal Proteins. Springer doi:10.1007/978-1-0716-3048-8_18 Beatriz Silva C.; Schrader, Tina A.; Schrader, Michael; Carmichael, Ruth E.
Unravelling the molecular mechanisms of peroxisome-organelle communication and interplay. Thesis/Dissertation Beatriz Silva.
Analysis of Yeast Peroxisomes via Spatial Proteomics. Methods Mol Biol. 2023;2643:13-31. doi: 10.1007/978-1-0716-3048-8_2. Hirakjyoti Das, Alex Zografakis, Oeljeklaus S, Warscheid B.
Towards automatization of organoid analysis: A deep learning approach to localize and quantify organoid images. Elsevier Computer Methods and Programs in Biomedicine update Asmaa Haja, José M. Horcas-Nieto, Barbara M. Bakker, Lambert Schomaker
Applying CRISPR-Cas9 Genome Editing to Study Genes Involved in Peroxisome Biogenesis or Peroxisomal Functions. Methods Mol Biol. 2023;2643:233-245. doi: 10.1007/978-1-0716-3048-8_17. Serhii Chornyi, Koster J, Waterham HR.
Isolation of Glycosomes from Trypanosoma brucei. Methods Mol Biol. 2023;2643:33-45. doi: 10.1007/978-1-0716-3048-8_3. Chethan Kumar Krishna, Franke L, Erdmann R, Kalel VC.
OrganelX web server for sub-peroxisomal and sub-mitochondrial protein localization and peroxisomal target signal detection. Comput Struct Biotechnol J. 2022 Dec 5;21:128-133. doi: 10.1016/j.csbj.2022.11.058. eCollection 2023. Anteghini M, Haja A, Martins Dos Santos VAP, Schomaker L, Saccenti E.
Organoids as a model to study intestinal and liver dysfunction in severe malnutrition. Biochim Biophys Acta Mol Basis Dis. 2023 Mar;1869(3):166635. doi: 10.1016/j.bbadis.2022.166635. José Manuel Horcas-Nieto, Versloot CJ, Langelaar-Makkinje M, Gerding A, Blokzijl T, Koster MH, Baanstra M, Martini IA, Coppes RP, Bourdon C, van Ijzendoorn SCD, Kim P, Bandsma RHJ, Bakker BM
Insights Into the Peroxisomal Protein Inventory of Zebrafish. Kamoshita M, Kumar R, Anteghini M, Kunze M, Islinger M, Martins Dos Santos V, Schrader M. Front Physiol. 2022 Feb 28;13:822509. doi: 10.3389/fphys.2022.822509. eCollection 2022.
Peroxisome-Derived Hydrogen Peroxide Modulates the Sulfenylation Profiles of Key Redox Signaling Proteins in Flp-In T-REx 293 Cells.
Front Cell Dev Biol. 2022 Apr 26;10:888873. doi: 10.3389/fcell.2022.888873. eCollection 2022 Lismont C, Revenco I, Li H, Costa CF, Lenaerts L, Hussein MAF, De Bie J, Knoops B, Van Veldhoven PP, Derua R, Fransen M.
A fully automated end-to-end process for fluorescence microscopy images of yeast cells: From segmentation to detection and classification.” arXiv preprint arXiv:2104.02793 (2021) Asmaa Haja, and Lambert RB Schomaker.
The Peroxisome-Autophagy Redox Connection: A Double-Edged Sword? Front Cell Dev Biol. 2021 Dec 16;9:814047. doi: 10.3389/fcell.2021.814047. eCollection 2021. Li H, Lismont C, Revenco I, Hussein MAF, Costa CF, Fransen M.
Peroxisomal Metabolite and Cofactor Transport in Humans. Front. Cell Dev. Biol., 11 January 2021. doi:10.3389/fcell.2020.613892 Sherhii Chornyi, Lodewijk IJlst, Carlo W.T. van Roermund, Ronald J.A. Wanders & Hans R. Waterham
Uncovering targeting priority to yeast peroxisomes using an in-cell competition assay. Proc Natl Acad Sci USA. 2020 Sep 1;117(35):21432-21440. doi: 10.1073/pnas.1920078117. Epub 2020 Aug 17. Mira Rosenthal, Eyal Metzl-Raz, Jérôme Bürgi, Eden Yifrach, Layla Drwesh , Amir Fadel, Yoav Peleg, Doron Rapaport, Matthias Wilmanns, Naama Barkai, Maya Schuldiner, Einat Zalckvar
Maintaining social contacts: The physiological relevance of organelle interactions. Biochim Biophys Acta Mol Cell Res. 2020 Nov;1867(11):118800.doi: 10.1016/j.bbamcr.2020.118800. Epub 2020 Jul 23. Beatriz S C Silva, Laura DiGiovanni, Rachel Kumar, Ruth E Carmichael, Peter K Kim, Michael Schrader
Peroxisomal Hydrogen Peroxide Metabolism and Signaling in Health and Disease. Int J Mol Sci. 2019 Jul 26;20(15):3673. doi: 10.3390/ijms20153673. Celien Lismont, Iulia Revenco, Marc Fransen
Peroxisomal Dysfunction and Oxidative Stress in Neurodegenerative Disease: A Bidirectional Crosstalk. Peroxisome Biology: Experimental Models, Peroxisomal Disorders and Neurological Diseases Marc Fransen, Iulia Revenco, Hongli Li, Cláudio F. Costa, Celien Lismont, Paul P. Van Veldhoven
Finding Balance: A series of U-Net models for Image Segmentation of Overlapping organoids Stefania Radu, Asmaa Haja, Lambert Schomaker
A Comparison of Different U-Net Models for Segmentation of Overlapping Organoids. Asmaa Haja, Stefania Radu, Lambert Schomaker ICBBE ’22: Proceedings of the 2022 9th International Conference on Biomedical and Bioinformatics Engineering
2,485 total views, 1 views today